Estimate sitewise evolution rates milestone - Effects of cost in protein evolution

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Effects of cost in protein evolution: Estimate sitewise evolution rates

1 ticket remains, 7 tickets total.

Calculate the sequence evolutionary rates for the sequences in the database

#15 Correlate tree length with non-synonymous mutations analysis evolution pylogenetic substituition-rates tree wall2005 new

✔ #7 ~~Run codeml on yeast alignments~~ analysis codeml parrallelisation skynet substituition-rates √ resolved
✔ #8 ~~Validate sitewise estimations~~ analysis data validation √ resolved
✔ #10 ~~Is yeast phylogenetic tree correct?~~ analysis data pylogenetic tree yeast √ resolved
✔ #9 ~~Update storage model for sitewise rate~~ analysis data substituition-rates √ resolved
✔ #11 ~~Add codeml code to Bioruby~~ analysis bioruby pylogenetic substituition-rates √ resolved
✔ #14 ~~Update loading of codeml data~~ alignments analysis codeml data pylogenetic substituition-rates √ resolved

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