Changesets - Effects of cost in protein evolution

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Updated plotting of gene cost density... was committed by Michael Barton

Thursday Dec 04

Commit [f3bc3444fccf14a52fb64e17c5c1e87333597005]

Created script to plot gene cost dens... was committed by Michael Barton

Wednesday Dec 03

Commit [284e95a4eccf4eaba722ab8d53f1296b0ead8007]

Created task to print average gene co... was committed by Michael Barton 03:05 PM

Commit [cea75c10de3fa8ad82e88196dcf2fd8a674b2ce8]

Created gene methods for total and av... was committed by Michael Barton 02:59 PM

Commit [1cc18d17d56d0d41d3acd0ccfa2c38470e2cbfaf]

Create gene specs for average and tot... was committed by Michael Barton 02:58 PM

Commit [b1dcdd2ce0469b4f7b2fdc6e0da3a218f553be3e]

Created gene factory http://github.co... was committed by Michael Barton 02:58 PM

Commit [0cf839bf87d9dd76f3a5c94a095b46ac9f2f6165]

Moved descriptions of average gene co... was committed by Michael Barton 12:29 PM

Commit [e7623fcc1e93359809a3d88281bb4b024713af38]

Moved plot flux sensitivity to plot d... was committed by Michael Barton 12:11 PM

Commit [e70d0a3ad494d7c8901f70ae71b2b4a1c9752bdd]

Merge branch 'master' into flux_analy... was committed by Michael Barton 12:09 PM

Commit [71101c3907ac2daa4ecee635241438c887dd9b93]

R script to plot flux estimation vs g... was committed by Michael Barton 12:08 PM

Commit [028bd408042e46f87cbe4be8b5fb49cdf9c749bc]

Updated rake method for plotting of f... was committed by Michael Barton 11:58 AM

Commit [dfe344afac4016bd7e862a445970ae6edeae69d9]

Created R script to plot distribution... was committed by Michael Barton

Tuesday Oct 21

Commit [7408c070cbed6f6563dcb43c9716149650d85054]

Pretty-fication http://github.com/mic... was committed by Michael Barton

Monday Oct 20

Commit [cd615a4b696f37ed53d9d470040c0c08c95c76b3]

Created task to print all flux sensit... was committed by Michael Barton 03:34 PM

Commit [1b3819b22c64e222a712e4bee883fbae78065159]

Updated flux sensitivity data loading... was committed by Michael Barton 03:33 PM

Commit [65f694fb76b445668fa2e624da35d5a4d8ce16f4]

Added dependency for flux sensitivity... was committed by Michael Barton 03:33 PM

Commit [e9822082b6a24b6ee4f097037c00a0e25eb27801]

Removed validation for gene_id to be ... was committed by Michael Barton 03:31 PM

Commit [be8afb13480dd02d901312654add2ce5d9181bac]

Merge branch 'flux' http://github.com... was committed by Michael Barton

Thursday Oct 16

Commit [166ef584d1eed1e6db58b2d7ee852ee8ea5a1e73]

Created r script to plot correlation ... was committed by Michael Barton 04:32 PM

Commit [ae47e4e0a66ba214a32ec6607132924b39e08a3f]

Added r script to plot gene cost vs t... was committed by Michael Barton 04:32 PM

Commit [19021252f9d55abe054cfe2724f83c831aa0d2bd]

Added r script to plot all sites vs r... was committed by Michael Barton 04:31 PM

Commit [8c3b4bd9105ef8ecb754b3956c5ebd2715cbe302]

Ignore r result files http://github.c... was committed by Michael Barton 02:44 PM

Commit [88954c41ce4b1f9b45eb261ec8989ce0677021a4]

Created task to print all site and co... was committed by Michael Barton 02:43 PM

Commit [e534eb1af798135d027f767c532035d2af7cf658]

Created rake task to print gene per-r... was committed by Michael Barton 02:28 PM

Commit [ecdadf08e6c797b8ab48667619bf1dcbd03d4afa]

Created rake task to plot gene cost v... was committed by Michael Barton 12:23 PM

Commit [1db148c092889192a55b4b0638a2bcd72e4bb1de]

Created rake tasks to drop and create... was committed by Michael Barton 12:22 PM

Commit [44887c59df819baf154c1c632146f26ecdbb6ac0]

Added flux sensitivity data http://gi... was committed by Michael Barton 12:13 PM

Commit [3557489b002b715b3e767026fea936efa6a98496]

Added flux sensitivity association to... was committed by Michael Barton 12:13 PM

Commit [ce078745b67b22f048dc80c6f50eab875c02d68b]

Created flux sensitivity model http:/... was committed by Michael Barton 12:12 PM

Commit [840c5e593440983678427333d34149008056fdbc]

Created migration to make flux_sensit... was committed by Michael Barton 12:11 PM

Commit [e4aaba6985427d8ea8e87654ab381f61a99c233a]

Updated rake task to print gene cost ... was committed by Michael Barton

Tuesday Oct 14

Commit [9b1a0db42a0cbd3210e6144bd9385c7a7c86fb75]

Added headings to print cost-site cor... was committed by Michael Barton

Saturday Oct 11

Commit [e52a4415e1797b492b1383c6054f59553dd73dc6]

Script to plot cost-site correlation ... was committed by Michael Barton 05:55 PM

Commit [982d8501fece88a6ce8cdf09094800d4e7f6488b]

Created task to print correlations by... was committed by Michael Barton 05:27 PM

Commit [94e95c89a91aeebe11c3198adf51850074bc3d99]

Fixed correlations by gene associatio... was committed by Michael Barton 05:27 PM

Commit [6b162414b67db3ebb423937ebda404e757ce97b9]

Created tasks to load and clear corre... was committed by Michael Barton 04:15 PM

Commit [27885667de754cf103de2c93ac10a3d323401b5e]

Added testing for NaN to correlation_... was committed by Michael Barton 04:14 PM

Commit [afab613c092e23f2bc9eae4348346fdabf7183da]

Added new version of rustat http://gi... was committed by Michael Barton 04:13 PM

Commit [95d3ebf269c8791edc14b14879a15da28db477f2]

Merge branch 'master' into starfish h... was committed by Michael Barton 03:05 PM

Commit [3def1dc16518a61f62a9c57e420c4bf0b5d5ce9b]

Fixed bug in estimation of correlatio... was committed by Michael Barton 03:04 PM

Commit [738abb5b1b9e9c136b022984cd3258c2971e6c99]

Merge branch 'master' into each http:... was committed by Michael Barton 03:03 PM

Commit [9e3807cf47fd3b30a00383b3a151eb3467cb9f0b]

config/environment log no longer adds... was committed by Michael Barton 03:03 PM

Commit [33019f0f749f8261d522d9854c7fe98a308421f7]

Fixed bugs in correlation_by_gene mod... was committed by Michael Barton

Thursday Oct 09

Commit [d057301b1ace238c4824a87269fe78dc555bb91f]

Added specs to test the right correct... was committed by Michael Barton 06:26 PM

Commit [8f9bd513f5cd5c65eec4b44399985d9cd15db406]

Regenerated alignment codon fixtures ... was committed by Michael Barton 06:26 PM

Commit [cb2ca52df68cb720bcd6c9de206ad34df8f4845a]

Updated fixture generator to handle b... was committed by Michael Barton 06:25 PM

Commit [b38013ed6a5f65521d7df0474d3d6daf67ea3a6a]

Updated specs to call r method from c... was committed by Michael Barton 04:02 PM

Commit [7718017e4aa6b9626329baacb8301b6fddcb73bb]

Merge branch 'master' into corr http:... was committed by Michael Barton 03:59 PM

Commit [4b4cdec322b180d73ca6c79a1d23ff9b920dc581]

Inserted new version of rustat http:/... was committed by Michael Barton 03:58 PM

Commit [4658016a19d85aa9d07a101cceef7b676661ec16]

Moved rustat to gems directory http:/... was committed by Michael Barton 03:56 PM

Commit [c64bf94bc1ddc5d88c837d9ccc52ef39d198c2d7]

Created initial creation method for C... was committed by Michael Barton 03:54 PM

Commit [d5214c29565f60884604db9ee683350a3b484ea7]

Added site mutation fixtures to cost ... was committed by Michael Barton 03:45 PM

Commit [d98822eefdbb522bee2215dc39f99456294e81af]

Updated typos in dynamic finders. Add... was committed by Michael Barton 02:40 PM

Commit [44aff99c837cc6c63eabfc41e87c771725d86c69]

Added correlation by gene specing htt... was committed by Michael Barton 02:20 PM

Commit [702275dea3ad6948ca3d7a286f63d6d1f0a3031e]

generate_fixtures.rb now produces fix... was committed by Michael Barton 12:16 PM

Commit [70c5d4b972f0677c6855f586581729ab16093986]

Fixtures for alignment codon costs ht... was committed by Michael Barton 12:16 PM

Commit [b38513681039a6b39033434e631b6a7ce198a50f]

Regenerated fixtures http://github.co... was committed by Michael Barton 12:16 PM

Commit [55e72284a5871cbb8fea955fb825309ebab45fd1]

Set database file logger reference to... was committed by Michael Barton 12:14 PM

Commit [2ae93577d59fe76b4758647733d51cf84aafb53a]

Repress activerecord migration messag... was committed by Michael Barton 11:54 AM

Commit [5e48189023feab2cc2059bee2e068282004ca184]

Created migration for correlations_by... was committed by Michael Barton 11:48 AM

Commit [74a8896375b2406c686414528dda309d3d1b8893]

Michaelbarton Effects of cost in protein evolution

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Michaelbarton Effects of cost in protein evolution

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