Changesets - Effects of cost in protein evolution

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Updated alignment/alignment codon ass... was committed by Michael Barton

Wednesday Aug 13

Commit [393b5c8b3cd6ff2efb8e71815dced3b343b60813]

Moved gene and alignment file paths t... was committed by Michael Barton 11:00 AM

Commit [31f717939093a52e156010aac5bf91288a7522b4]

Updated typos in sitewise specing [#9... was committed by Michael Barton 10:59 AM

Commit [e88962353eb1025257c3246f2a8454599e73016b]

Added starfish based alignment loadin... was committed by Michael Barton

Tuesday Aug 12

Commit [905cf56b5079d187aa826461dcc0405f2b675232]

Updated project root to use absolute ... was committed by Michael Barton 05:45 PM

Commit [881c12215d107600f6c1da90fee958d1d77d2586]

Updated specing for new alignment met... was committed by Michael Barton 04:08 PM

Commit [ae7f21585de76fc3561d70cae77dfa2499f8a40d]

Updated methods for alignment to hash... was committed by Michael Barton 04:07 PM

Commit [378f760607ca2c65ac48709f05097401f3d55711]

Created startfish loader for gene and... was committed by Michael Barton 02:54 PM

Commit [07274afff0621ae3d852cc245843e4a849e0a4e4]

Added initial specing for site mutati... was committed by Michael Barton 02:53 PM

Commit [f9e21cdd876d4523a57bf81e4a967b7bf8702702]

Made evolutionary rate initialiser pu... was committed by Michael Barton 02:53 PM

Commit [038317f0d295f2639ebd5af5f452b867008e27de]

Added helper method to load alignment... was committed by Michael Barton

Monday Aug 11

Commit [4858169d8d75b60ab6b3f161ed62db705c11fb11]

Added comparable to alignment codon h... was committed by Michael Barton 06:50 PM

Commit [0be61e9aec2c4e78bcf2c9b6bd46dc0fe7ae8567]

Added column for tree length http://g... was committed by Michael Barton 06:11 PM

Commit [3a6684078b68562297fa82ef25cbbf4c0f6aa51c]

Updated database associations for sit... was committed by Michael Barton 06:10 PM

Commit [54bdded7a6f5030d2d7faec17afe0d13b1af844d]

Fixed .gitignore conflict Merge bran... was committed by Michael Barton

Tuesday Aug 05

Commit [98447963d67ceca30270f4ba52c7d3e0e3057cc2]

Added description file for stage 2 [#... was committed by Michael Barton

Monday Aug 04

Commit [caa3cee4266981f1de549fbd337062274e4ae6d5]

Removed www build tasks from project ... was committed by Michael Barton 10:34 PM

Commit [2b9676e1eeec1061da01f6bd35a6bcc2b22e09e3]

Removed www tasks from stage 2 rakefi... was committed by Michael Barton 10:32 PM

Commit [11fdd3f33455ea233b89fcb50d282691643c208d]

Removed www tasks from stage 1 rake f... was committed by Michael Barton 10:31 PM

Commit [04b30a54760312b83120a6ac9c1d395d750293c4]

Moved www tasks into the project root... was committed by Michael Barton 10:29 PM

Commit [1a1738491f9899190953ca94f73ae9614b22dd32]

Refactored page rendering to genderic... was committed by Michael Barton 06:41 PM

Commit [3b3e9b0ab6af34b382009693335611e622a5e78c]

Updated stage with class methods to m... was committed by Michael Barton 06:32 PM

Commit [be10b94e9896c57430f70ce2a3e8f93c5fcc3a07]

Updated rakefile to generate stages o... was committed by Michael Barton 06:31 PM

Commit [a1e1b77d22e00f2519dadcb1074116a8cd5d51b8]

Added indices to migrations for align... was committed by Michael Barton 01:06 PM

Commit [303cc565e29099fb86fd3ebe22637c46c7ae92f9]

Created file for running starfish-typ... was committed by Michael Barton

Saturday Aug 02

Commit [48ef72c03e8f7fc45375583758e8caa7f5ea1193]

Updated to ignore log file directory ... was committed by Michael Barton 05:44 PM

Commit [33ef9b9048e10d2efc2c09f2a13ee1a5dafa6bcb]

Updated www_rebuild task for generati... was committed by Michael Barton

Monday Jul 28

Commit [f212d88c19febb33334ab9b47dca0f9243fd1deb]

Created template file for intial webs... was committed by Michael Barton 07:35 PM

Commit [29656ba06e7d43b56d9348ee6bbdcccb54b52099]

Updated project rake file to reflect ... was committed by Michael Barton 07:26 PM

Commit [f6a7266e3228fdb0cd3e937b4213dba794480a46]

Updated project and stage models to c... was committed by Michael Barton 07:25 PM

Commit [8829b49d4669ddc5e067226e61ba4f64fc2a2a27]

Updated project model to conform to a... was committed by Michael Barton 07:23 PM

Commit [7f0e613e8a8df55ce4e4be0dd1a1003e8eb1da15]

No longer using Ramaze to render the ... was committed by Michael Barton 07:22 PM

Commit [133b8e4f669dd43918f3999a08330fc5c465b757]

Fixed activerecord based specing erro... was committed by Michael Barton

Monday Jul 21

Commit [6a1fe06b78335218cc5e84a3bebe56ed496ce5b4]

Merge branch 'master' of git@github.c... was committed by Michael Barton 11:10 AM

Commit [64db0124012116cc5e9244e34d0739e194409bda]

Changed all datamapper references to ... was committed by Michael Barton 10:48 AM

Commit [0215d39eb22c3778457ac406a7dd742416477c13]

Removed DataMapper from models. Moved... was committed by Michael Barton

Sunday Jul 20

Commit [7965c351392220caa3e34248918217fc3d329dda]

Updated rake tasks to use ActiveRecor... was committed by Michael Barton

Wednesday Jun 25

Commit [d24bffcfa5496549c96155a1869633917563bce0]

Added database recreate task http://g... was committed by Michael Barton 11:11 AM

Commit [6c5610179e929e506594d3dcf4a260477ac7249f]

Updated alignment codon specing to us... was committed by Michael Barton 10:52 AM

Commit [43f5cd4865d4e7f934f8e49bf0d8f73bd50a1935]

Switch AlignmentCodon to use ActiveRe... was committed by Michael Barton 10:44 AM

Commit [ab48bc0bff4bcd36b8c366681a2843f8af7d59ea]

Updated for ActiveRecord code in alig... was committed by Michael Barton

Tuesday Jun 24

Commit [fa77df5c8768245f085d4b78792b633687f57447]

Updated Gene spec before/after method... was committed by Michael Barton 06:16 PM

Commit [35d67b99ccb46ff4a5bc19dccab7293fc30118f9]

Updated clear_all_tables to use Activ... was committed by Michael Barton 06:15 PM

Commit [e618c882f65f3d66bfaa86794025ec6276cda32c]

Switched in ActiveRecord code in spec... was committed by Michael Barton 06:14 PM

Commit [3760efd983708e566ce05c475f5ee5ca622415d1]

Fixed Typo in gene migration http://g... was committed by Michael Barton 06:13 PM

Commit [284ed40f6cb4fae459121c9e3375e3bc62209c55]

Added migrations for gene, alignment,... was committed by Michael Barton 05:57 PM

Commit [b47963356195416d94feb92c04ed9caea779ce35]

Switch gene, alignment, alignment cod... was committed by Michael Barton 05:56 PM

Commit [ab743ebbaedeb18a1d1119c698674a62484d06f4]

Set drop and create for database http... was committed by Michael Barton 05:55 PM

Commit [840159a4749bdb3a7435cc4ceac05398a083b21d]

Set active record logger http://githu... was committed by Michael Barton 05:54 PM

Commit [0ee56439faf56d3cd6de0de1426fc66179b4367a]

Merge branch 'master' into activereco... was committed by Michael Barton 05:26 PM

Commit [4f21bb76b1fee36333a124d87de975d9f384aff7]

Merge branch 'load_codons_task' http:... was committed by Michael Barton 04:10 PM

Commit [7a8c413c7dd6fd764b0e140c26eedb0b94fc7a37]

Added profiling file for AlignmentCod... was committed by Michael Barton 04:09 PM

Commit [035d461d0e1f86895f89cc20528db9497499397a]

Optimised AlignmentCodon. Use map/col... was committed by Michael Barton 04:06 PM

Commit [56746dd10cb1c4a41d6cf8df222e855ad2ac7c02]

Optimised Alignment#each http://githu... was committed by Michael Barton 04:05 PM

Commit [1d8524c180e603934912cb1ec0daa2877d1ceb01]

Added tasks for loading all alignment... was committed by Michael Barton 02:07 PM

Commit [f28ef0615d0faf2dc36f84939374777e46f96b07]

Fixed database switching problem. In ... was committed by Michael Barton

Monday Jun 23

Commit [7fa9d0319173a34a5f604ed828d8087b85339d0c]

Added message for amino acid validati... was committed by Michael Barton 05:18 PM

Commit [82543b708a64e90f938dfd510c7eb52a34fe8498]

Added AlignmentCodon to clear tables ... was committed by Michael Barton 05:09 PM

Commit [7fd403b25c556afd5d52efc604f6d5d5da16113e]

More alignment codon specing http://g... was committed by Michael Barton 05:02 PM

Commit [caa342b13442feb692f8c8ac217cc7be068b6da0]

Updated start position numbering in a... was committed by Michael Barton 05:01 PM

Commit [1380c2a8dce27c537ef8ab5de3c4ecefbbef56df]

Michaelbarton Effects of cost in protein evolution

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