Changesets - Effects of cost in protein evolution

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Made sure tables are cleared before e... was committed by Michael Barton

Monday Jun 23

Commit [96591822a07b1da17864ec279ba389dbb4a74591]

Added method to populate alignment co... was committed by Michael Barton 04:50 PM

Commit [c3715a4b1f07ef2bac6a52ac4ffadc893f44da75]

Added additional validations for alig... was committed by Michael Barton 04:49 PM

Commit [7c06ffe5a1bbf60f3f768203211d2bdf437ff1e8]

Merge branch 'master' into add_alignm... was committed by Michael Barton 01:11 PM

Commit [7d525b68e7c5403fa8311c7d7beb6bb355b529fa]

Now ignores *database.yml files http:... was committed by Michael Barton 01:09 PM

Commit [ec6473c8b63886f61e8749d5c75027319d5b1364]

Added migrations for alignment and ge... was committed by Michael Barton 01:07 PM

Commit [6a9cb62bc9a0eb42bc48efa07c479815e4fb322c]

Switch gene and alignment to active r... was committed by Michael Barton 01:06 PM

Commit [477913f92da936eee36726b35822fab7f6078705]

Updated config to use active record c... was committed by Michael Barton 12:34 PM

Commit [32a4f79d51bf24949fec3135369fb5fd5510161d]

Updated helper script to automaticall... was committed by Michael Barton 12:05 PM

Commit [32c146823a11474b6ef5c639c4e9ecc2f49e553a]

Fixed errors in alignment_codon speci... was committed by Michael Barton 12:04 PM

Commit [e8de201af57fbd107e52fb9cec6ccba108b722eb]

Added validation to alignment codon h... was committed by Michael Barton 12:03 PM

Commit [c96afdabd2dfe94e4f25ff59f8e6bcd54234c54b]

Merge branch 'add_tree_choice' http:/... was committed by Michael Barton

Friday Jun 20

Commit [d1528cb5219048781e68570a629cda728ae33e9d]

Updated method in phylogenetic tree a... was committed by Michael Barton 05:06 PM

Commit [f22974dde1796772270283d0bb4fa125922eb159]

Added specing for alignment tree meth... was committed by Michael Barton 05:06 PM

Commit [c42aeef49771def364fb8dd2779b62dec236beb2]

Added tree method to alignment. Retur... was committed by Michael Barton 05:06 PM

Commit [9bb325033437612cc86c8c4b3d631d65bbc2c2a5]

Fixed Typo http://github.com/michaelb... was committed by Michael Barton 05:01 PM

Commit [7d851b28adaf39cdb7945eb48eae30f7ed652e8a]

Added specing for alignment codon. ht... was committed by Michael Barton 01:25 PM

Commit [07b644a5672a342ac38d6a6f99590617875e8f86]

Updated alignment model with has n al... was committed by Michael Barton 01:24 PM

Commit [0ae7eaebc683fd39ab06cb1be5b668f140dd34d0]

Created initial model to store alignm... was committed by Michael Barton 01:24 PM

Commit [415787896859357110634981d39a4eb0cd8fbb3a]

Fixed stage number in analysis rake f... was committed by Michael Barton 11:36 AM

Commit [51f11f133d33a114c5637474ed99fce4bddf092a]

Added enumerable to alignment model, ... was committed by Michael Barton 11:30 AM

Commit [bd91f9748369d8187c4db21c9970b37d9e53fd14]

Added logging to evolutionary rate ba... was committed by Michael Barton

Wednesday Jun 18

Commit [375ab0d5b8573c30efe1677736381300a197210b]

Added Validations for evolutionary ra... was committed by Michael Barton 03:58 PM

Commit [578cbaf47452ae8759380ee48927ddc9477cd41d]

Removed delete_all method http://gith... was committed by Michael Barton

Tuesday Jun 17

Commit [02f7281eb6fc9835c608179e530b4506a236707e]

Added loading of 002 analysis file ht... was committed by Michael Barton 05:27 PM

Commit [7715530af483b4bd09aa976e951750660bec851e]

Added association testing for alignme... was committed by Michael Barton 05:27 PM

Commit [6f7d08f0750e98a5e41fc8382274c67f7de7cd29]

Added method to estimate evolutionary... was committed by Michael Barton 05:26 PM

Commit [e40616ddb5055705468101625d5f01f205f6c239]

Switched DataMapper gem from 0.3 to 0... was committed by Michael Barton 05:24 PM

Commit [c3059e53f467da50d5017909fe87227a02445e13]

Added analysis task to run codeml on ... was committed by Michael Barton

Saturday Jun 14

Commit [10dcaaa488489d5e46ce355a157dee7008acedcf]

Added some simple testing for running... was committed by Michael Barton 03:23 PM

Commit [86cad34c7ce28b9621d8ee09f413232d03d5918f]

Added helper methods to generate temp... was committed by Michael Barton 03:20 PM

Commit [b30337dfcaff58bf4cccc0b4b46f80ed0d0c85f2]

Created DataMapper model for storing ... was committed by Michael Barton 03:15 PM

Commit [00e97c2e3fcfcd39b323cfff58b26365b2164ff2]

Main controller now provides a webser... was committed by Michael Barton

Friday Jun 13

Commit [19a159d7d7a1bc9e1f17b9729fc88bbd2ca88899]

envionment.rb now loads vendor librar... was committed by Michael Barton 01:07 PM

Commit [bba897f5c254ad0daf93fa1a414ac11cc51f23b7]

Updated main project description so t... was committed by Michael Barton 01:06 PM

Commit [cd29b63833837dc17151ab5e51cad7f3bd513f2f]

Added to_s method for alignment. Adde... was committed by Michael Barton 01:04 PM

Commit [b63657127f0942de7bb016e10eca89ad9c1477b4]

Alignment spec now creates a valid ge... was committed by Michael Barton 01:03 PM

Commit [6647ca30b0604522e5a4c28694679b34064a5038]

Record is returned when valid gene is... was committed by Michael Barton 01:00 PM

Commit [6e6ff0169112336ebfa58ac8bcb9f204da2ea9e6]

Set helper script so that different l... was committed by Michael Barton 12:59 PM

Commit [56fb22852b4dfc93ea4ae34cc584665cbd3d6dab]

Added a gene spec file. Tests simple ... was committed by Michael Barton 12:58 PM

Commit [f96de1be89e636b73534317d9001e1b9994eb2a1]

Renamed spec data files to make more ... was committed by Michael Barton 12:57 PM

Commit [fc94924b8648192d6a260559a0a2f48e35b942dd]

Compeleted data loading. Set version ... was committed by Michael Barton

Tuesday Jun 03

Commit [0f59cb4c064c25802d1e75501f76e8f2a3d8aaf1]

Updated description for first stage. ... was committed by Michael Barton 12:38 PM

Commit [8d3a9913e3d93e45eb458016947cb831f576e1da]

Subdirectory analysis rake files are ... was committed by Michael Barton 12:29 PM

Commit [8d1f0e5a5b6c5e73fb29cdeb53d7cfb6e3306602]

Added READMEs for project directories... was committed by Michael Barton 12:05 PM

Commit [6d982eee4f63c811872017aec3a8482c939cc783]

Michaelbarton Effects of cost in protein evolution

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Michaelbarton Effects of cost in protein evolution

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