Overview - Effects of cost in protein evolution

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Added task to load rate estimations f... was committed by Michael Barton
Thursday Aug 21

Commit [77984cf023d06eda38aa38b65b117d3a818910fe]
changeset
Updated foreign key associations for ... was committed by Michael Barton 03:12 PM
Commit [91f98590187350219cb0af918ad0b22b4914cab5]
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Updated analysis.rake for 002 to use ... was committed by Michael Barton 03:12 PM
Commit [0bc27a8fd178ba4680352d9fca342d25c0b7d58c]
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Updated starfish loader to include th... was committed by Michael Barton 03:12 PM
Commit [b30666a73a31111652fbbaab28268d08bcebeb83]
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Updated migration for gene table to a... was committed by Michael Barton 03:12 PM
Commit [55ae5149b72954d18e82c2b238bfe2d69f408fed]
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~~Update loading of codeml data~~ was updated by Michael Barton
Tuesday Aug 19

~~#14~~ / Estimate sitewise evolution rates / ✓resolved
ticket
Updated sitewise analysis specing for... was committed by Michael Barton 06:28 PM
Commit [5b16c21b6b87ee76f2e6757cfb45b5c47fd20595]
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Switched site mutation to use a map, ... was committed by Michael Barton 06:28 PM
Commit [e8e8702c47191b323f24f7df0404a1c24a4e3d41]
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Updated alignment codon specing for n... was committed by Michael Barton 06:01 PM
Commit [330b26610ee79e38c0c01ce7b20a3f8c590e5197]
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Updated loading of alignment codons t... was committed by Michael Barton 06:01 PM
Commit [2170c0775d7e4044d5d2dd2a14c9bd913ab08e1e]
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Update loading of codeml data was updated by Michael Barton 06:01 PM
#14 / Estimate sitewise evolution rates / open
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Added index and column for whether al... was committed by Michael Barton 06:01 PM
Commit [6421673d144724d2a35e318c294d992f15649b0d]
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Update loading of codeml data was updated by Michael Barton 03:35 PM
#14 / Estimate sitewise evolution rates / open
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EvolutionaryRate.tree_length is now s... was committed by Michael Barton 03:35 PM
Commit [1611beb4280bdb628beb3cd97327bba42937d77d]
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Updated bioruby code to include parsi... was committed by Michael Barton 03:35 PM
Commit [59d2a3d55b875836b9c07820d750620e24aac8ad]
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Updated module reference from Bio::Co... was committed by Michael Barton 03:35 PM
Commit [068a826370915772500c72f27bafe56e0e98b8b6]
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Updated codeml requirement in environ... was committed by Michael Barton 03:35 PM
Commit [66b7826ef4f900a6a5aa2ef96d3c5160495481c2]
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Added Codeml option to include data w... was committed by Michael Barton 03:35 PM
Commit [f90297f678aa00cac82adcd4b8600f893d5fc200]
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Update loading of codeml data was updated by Michael Barton 03:35 PM
#14 / Estimate sitewise evolution rates / open
ticket
Added new version of bioruby with cod... was committed by Michael Barton 03:34 PM
Commit [bc95b56fc5e2bf1907508463c4b1f58dd2b9fa00]
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Updated specing data for alignment YD... was committed by Michael Barton 03:34 PM
Commit [bb3ecb3ee772b504fd987c9a9be2513545d2d2e7]
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Update loading of codeml data was updated by Michael Barton 03:34 PM
#14 / Estimate sitewise evolution rates / open
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~~Add codeml code to Bioruby~~ was updated by Michael Barton 02:12 PM
~~#11~~ / Estimate sitewise evolution rates / ✓resolved
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Update loading of codeml data was updated by Michael Barton 12:14 PM
#14 / Estimate sitewise evolution rates / open
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~~Update alignment model~~ was updated by Michael Barton 12:11 PM
~~#13~~ / Load sequence data / ✓resolved
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Updated specing to check that alignme... was committed by Michael Barton 12:09 PM
Commit [f0e9719ba081fa84cd3c1afc7c5d7b95062be868]
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Update alignment model was updated by Michael Barton 12:09 PM
#13 / Load sequence data / open
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Added specing to check that alignment... was committed by Michael Barton 12:09 PM
Commit [2c43279703ac5b254f5c83294b2412818177bf46]
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Update alignment model was updated by Michael Barton 12:09 PM
#13 / Load sequence data / open
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Updated specing to check error messag... was committed by Michael Barton 12:09 PM
Commit [6c7484805eaaf9229306c87f0f89a5c90a804433]
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Added spec to ensure that alignments ... was committed by Michael Barton 12:09 PM
Commit [b954d6e560dc4a82677c161fefc798e92b1deb9a]
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Update alignment model was updated by Michael Barton 11:22 AM
#13 / Load sequence data / open
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Update alignment model was updated by Michael Barton
Monday Aug 18

#13 / Load sequence data / open
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Added sequence files for YDL177C http... was committed by Michael Barton 08:18 PM
Commit [9fb0e62d0c5cfc3ec37cc4cf61132aafecab4136]
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Changed data in alignment specing for... was committed by Michael Barton 08:18 PM
Commit [9f548d723f37ba57317c266675bbf76a17e56f40]
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Updated method to check what the name... was committed by Michael Barton 08:18 PM
Commit [8c00d8be53511993703c7f5e327a68f862b0d806]
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Added chunk of code at the start of t... was committed by Michael Barton 08:18 PM
Commit [189fbe3b191ef19e0d1b44dc50cbb028f7761123]
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Updated tree method for the alignment... was committed by Michael Barton 08:18 PM
Commit [90214bad7f15ec966a3fa2d0fb743c9e4dc62bfa]
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Added additional validations for alig... was committed by Michael Barton 08:18 PM
Commit [26d2c3d8d3c7ee174ffe34af9ba7e9b883ea4309]
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Added method to gene model to strip l... was committed by Michael Barton 08:18 PM
Commit [f98cf651f9df106dac67bea00cc682f4a757198c]
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Switched test case gene being used, n... was committed by Michael Barton 08:18 PM
Commit [0f7a9f3a237fc85a27964b105ccc6b6e785144ab]
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Gene loading now removes line breaks.... was committed by Michael Barton 08:18 PM
Commit [5678778689dcb33b68dca56f66b1f4a7d94df70b]
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Updated alignment to return only one ... was committed by Michael Barton 08:18 PM
Commit [c8a2df6b43054c0496226e5cad2f58965eaeadf4]
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Update alignment model was updated by Michael Barton 08:18 PM
#13 / Load sequence data / open
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Gene loading now removes line breaks.... was committed by Michael Barton 08:18 PM
Commit [16a75fecd4459e86b21a83de646f7a95507205d4]
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Added validation to ensure that the y... was committed by Michael Barton 08:18 PM
Commit [b46fb75a2d220595c9df0927cabe28aa2e106ea9]
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Update alignment model was updated by Michael Barton 08:18 PM
#13 / Load sequence data / open
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Reordered validations to execute in o... was committed by Michael Barton 08:18 PM
Commit [7f264c9e69eb6b56b4a5894bedb7f97379923acc]
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Update alignment model was updated by Michael Barton 08:18 PM
#13 / Load sequence data / open
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Set validates_presence_of to be first... was committed by Michael Barton 08:18 PM
Commit [1afdcdc090b5007eb30ebe4a4a509c4377d6534a]
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Michaelbarton Effects of cost in protein evolution

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