Overview - Effects of cost in protein evolution

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Update alignment model was updated by Michael Barton
Monday Aug 18

#13 / Load sequence data / open
ticket
Update alignment model was updated by Michael Barton 03:45 PM
#13 / Load sequence data / open
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Update alignment model was updated by Michael Barton 03:39 PM
#13 / Load sequence data / new
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Update loading of codeml data was created by Michael Barton 02:06 PM
#14 / Estimate sitewise evolution rates / new
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Update alignment model was created by Michael Barton 02:03 PM
#13 / Load sequence data / new
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~~Add codeml code to Bioruby~~ was updated by Michael Barton
Wednesday Aug 13

~~#11~~ / Estimate sitewise evolution rates / ✓hold
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~~Run codeml on yeast alignments~~ was updated by Michael Barton 03:13 PM
#7 / Estimate sitewise evolution rates / ✓resolved
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~~Update storage model for sitewise rate~~ was updated by Michael Barton 03:11 PM
#9 / Estimate sitewise evolution rates / ✓resolved
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Added profiling for loading site muta... was committed by Michael Barton 03:09 PM
Commit [bfbd9c342806aa0bfce393c73a6b9494f616fe57]
changeset
Updated alignment codon profiling to ... was committed by Michael Barton 03:09 PM
Commit [09613385bc50a7fcb2a761df3e45d6f1659400ad]
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Updated all specs to use helper data ... was committed by Michael Barton 03:09 PM
Commit [10aa7b7fce8bba5ccc6b7db8ae81d5ef0bb3a42d]
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Created helper methods for specing to... was committed by Michael Barton 03:09 PM
Commit [a750287bccb921071c276495ffb864cb8f9c0891]
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Added more specs for site mutation ra... was committed by Michael Barton 02:14 PM
Commit [84eac78c800d475dc7003fdff90b52e95dcbfb8a]
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Fixed evolutionary rate method call i... was committed by Michael Barton 02:14 PM
Commit [7575edd2d8644eb605d32b8851668e370f937861]
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Updated starfish method to use alignm... was committed by Michael Barton 02:14 PM
Commit [a4bddb436fd1d6ac2bde53330ffa87e360c5eaea]
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Swapped which enumerable was being in... was committed by Michael Barton 02:14 PM
Commit [f6870768ef548e4bf5c9d17b09a66e4f444f33d5]
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Merge branch 'master' into gene_rate ... was committed by Michael Barton 02:14 PM
Commit [9508948e23d2379bbdb1f434b5c9c15040904ddd]
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Change private method calls not to ca... was committed by Michael Barton 02:14 PM
Commit [edf4727cee39efe8de3a044ae92ee39b73a5c3a6]
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Updated alignment/alignment codon ass... was committed by Michael Barton 02:14 PM
Commit [393b5c8b3cd6ff2efb8e71815dced3b343b60813]
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Moved gene and alignment file paths t... was committed by Michael Barton 02:14 PM
Commit [31f717939093a52e156010aac5bf91288a7522b4]
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Updated typos in sitewise specing [#9... was committed by Michael Barton 02:14 PM
Commit [e88962353eb1025257c3246f2a8454599e73016b]
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Update storage model for sitewise rate was updated by Michael Barton 02:14 PM
#9 / Estimate sitewise evolution rates / open
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Created startfish loader for gene and... was committed by Michael Barton 02:14 PM
Commit [07274afff0621ae3d852cc245843e4a849e0a4e4]
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Added initial specing for site mutati... was committed by Michael Barton 02:14 PM
Commit [f9e21cdd876d4523a57bf81e4a967b7bf8702702]
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Made evolutionary rate initialiser pu... was committed by Michael Barton 02:14 PM
Commit [038317f0d295f2639ebd5af5f452b867008e27de]
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Added helper method to load alignment... was committed by Michael Barton 02:14 PM
Commit [4858169d8d75b60ab6b3f161ed62db705c11fb11]
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Update storage model for sitewise rate was updated by Michael Barton 02:14 PM
#9 / Estimate sitewise evolution rates / open
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Added comparable to alignment codon h... was committed by Michael Barton 02:14 PM
Commit [0be61e9aec2c4e78bcf2c9b6bd46dc0fe7ae8567]
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Added column for tree length http://g... was committed by Michael Barton 02:14 PM
Commit [3a6684078b68562297fa82ef25cbbf4c0f6aa51c]
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Updated database associations for sit... was committed by Michael Barton 02:14 PM
Commit [54bdded7a6f5030d2d7faec17afe0d13b1af844d]
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~~Finish descriptions~~ was updated by Michael Barton 02:14 PM
#3 / Load sequence data / ✓resolved
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Added starfish based alignment loadin... was committed by Michael Barton
Tuesday Aug 12

Commit [905cf56b5079d187aa826461dcc0405f2b675232]
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Updated project root to use absolute ... was committed by Michael Barton 05:53 PM
Commit [881c12215d107600f6c1da90fee958d1d77d2586]
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Updated specing for new alignment met... was committed by Michael Barton 04:09 PM
Commit [ae7f21585de76fc3561d70cae77dfa2499f8a40d]
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Updated methods for alignment to hash... was committed by Michael Barton 04:09 PM
Commit [378f760607ca2c65ac48709f05097401f3d55711]
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Auto generated HTML representation of data was updated by Michael Barton
Tuesday Aug 05

#6 / Website front end / open
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Fixed .gitignore conflict Merge bran... was committed by Michael Barton 01:32 PM
Commit [98447963d67ceca30270f4ba52c7d3e0e3057cc2]
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Added description file for stage 2 [#... was committed by Michael Barton 01:32 PM
Commit [caa3cee4266981f1de549fbd337062274e4ae6d5]
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Auto generated HTML representation of data was updated by Michael Barton 01:32 PM
#6 / Website front end / new
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Removed www build tasks from project ... was committed by Michael Barton 01:32 PM
Commit [2b9676e1eeec1061da01f6bd35a6bcc2b22e09e3]
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Auto generated HTML representation of data was updated by Michael Barton 01:32 PM
#6 / Website front end / new
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Removed www tasks from stage 2 rakefi... was committed by Michael Barton 01:32 PM
Commit [11fdd3f33455ea233b89fcb50d282691643c208d]
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Auto generated HTML representation of data was updated by Michael Barton 01:32 PM
#6 / Website front end / new
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Removed www tasks from stage 1 rake f... was committed by Michael Barton 01:32 PM
Commit [04b30a54760312b83120a6ac9c1d395d750293c4]
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Auto generated HTML representation of data was updated by Michael Barton 01:32 PM
#6 / Website front end / new
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Moved www tasks into the project root... was committed by Michael Barton 01:32 PM
Commit [1a1738491f9899190953ca94f73ae9614b22dd32]
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Refactored page rendering to genderic... was committed by Michael Barton 01:32 PM
Commit [3b3e9b0ab6af34b382009693335611e622a5e78c]
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Auto generated HTML representation of data was updated by Michael Barton 01:32 PM
#6 / Website front end / new
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Updated stage with class methods to m... was committed by Michael Barton 01:32 PM
Commit [be10b94e9896c57430f70ce2a3e8f93c5fcc3a07]
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Auto generated HTML representation of data was updated by Michael Barton 01:32 PM
#6 / Website front end / new
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Michaelbarton Effects of cost in protein evolution

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