Overview - Effects of cost in protein evolution

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Set drop and create for database http... was committed by Michael Barton
Wednesday Jun 25

Commit [840159a4749bdb3a7435cc4ceac05398a083b21d]
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Merge branch 'load_codons_task' http:... was committed by Michael Barton
Tuesday Jun 24

Commit [7a8c413c7dd6fd764b0e140c26eedb0b94fc7a37]
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Added tasks for loading all alignment... was committed by Michael Barton 04:05 PM
Commit [f28ef0615d0faf2dc36f84939374777e46f96b07]
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Optimised AlignmentCodon. Use map/col... was committed by Michael Barton 04:04 PM
Commit [56746dd10cb1c4a41d6cf8df222e855ad2ac7c02]
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Added profiling file for AlignmentCod... was committed by Michael Barton 04:04 PM
Commit [035d461d0e1f86895f89cc20528db9497499397a]
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Optimised Alignment#each http://githu... was committed by Michael Barton 04:04 PM
Commit [1d8524c180e603934912cb1ec0daa2877d1ceb01]
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Fixed database switching problem. In ... was committed by Michael Barton
Monday Jun 23

Commit [7fa9d0319173a34a5f604ed828d8087b85339d0c]
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Added message for amino acid validati... was committed by Michael Barton 05:13 PM
Commit [82543b708a64e90f938dfd510c7eb52a34fe8498]
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Added specing for alignment codon. ht... was committed by Michael Barton 05:07 PM
Commit [07b644a5672a342ac38d6a6f99590617875e8f86]
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Fixed Typo http://github.com/michaelb... was committed by Michael Barton 05:07 PM
Commit [7d851b28adaf39cdb7945eb48eae30f7ed652e8a]
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Updated alignment model with has n al... was committed by Michael Barton 05:07 PM
Commit [0ae7eaebc683fd39ab06cb1be5b668f140dd34d0]
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Added AlignmentCodon to clear tables ... was committed by Michael Barton 05:07 PM
Commit [7fd403b25c556afd5d52efc604f6d5d5da16113e]
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Updated start position numbering in a... was committed by Michael Barton 05:07 PM
Commit [1380c2a8dce27c537ef8ab5de3c4ecefbbef56df]
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Now ignores *database.yml files http:... was committed by Michael Barton 05:07 PM
Commit [ec6473c8b63886f61e8749d5c75027319d5b1364]
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Fixed errors in alignment_codon speci... was committed by Michael Barton 05:07 PM
Commit [e8de201af57fbd107e52fb9cec6ccba108b722eb]
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Added validation to alignment codon h... was committed by Michael Barton 05:07 PM
Commit [c96afdabd2dfe94e4f25ff59f8e6bcd54234c54b]
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Merge branch 'master' into add_alignm... was committed by Michael Barton 05:07 PM
Commit [7d525b68e7c5403fa8311c7d7beb6bb355b529fa]
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Updated helper script to automaticall... was committed by Michael Barton 05:07 PM
Commit [32c146823a11474b6ef5c639c4e9ecc2f49e553a]
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Created initial model to store alignm... was committed by Michael Barton 05:07 PM
Commit [415787896859357110634981d39a4eb0cd8fbb3a]
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Made sure tables are cleared before e... was committed by Michael Barton 05:07 PM
Commit [96591822a07b1da17864ec279ba389dbb4a74591]
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Added method to populate alignment co... was committed by Michael Barton 05:07 PM
Commit [c3715a4b1f07ef2bac6a52ac4ffadc893f44da75]
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Added additional validations for alig... was committed by Michael Barton 05:07 PM
Commit [7c06ffe5a1bbf60f3f768203211d2bdf437ff1e8]
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More alignment codon specing http://g... was committed by Michael Barton 05:07 PM
Commit [caa342b13442feb692f8c8ac217cc7be068b6da0]
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Merge branch 'add_tree_choice' http:/... was committed by Michael Barton
Friday Jun 20

Commit [d1528cb5219048781e68570a629cda728ae33e9d]
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Added tree method to alignment. Retur... was committed by Michael Barton 05:19 PM
Commit [9bb325033437612cc86c8c4b3d631d65bbc2c2a5]
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Fixed stage number in analysis rake f... was committed by Michael Barton 05:19 PM
Commit [51f11f133d33a114c5637474ed99fce4bddf092a]
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Added enumerable to alignment model, ... was committed by Michael Barton 05:19 PM
Commit [bd91f9748369d8187c4db21c9970b37d9e53fd14]
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Updated method in phylogenetic tree a... was committed by Michael Barton 05:19 PM
Commit [f22974dde1796772270283d0bb4fa125922eb159]
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Added specing for alignment tree meth... was committed by Michael Barton 05:19 PM
Commit [c42aeef49771def364fb8dd2779b62dec236beb2]
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Added logging to evolutionary rate ba... was committed by Michael Barton
Wednesday Jun 18

Commit [375ab0d5b8573c30efe1677736381300a197210b]
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Added Validations for evolutionary ra... was committed by Michael Barton 03:53 PM
Commit [578cbaf47452ae8759380ee48927ddc9477cd41d]
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Switched DataMapper gem from 0.3 to 0... was committed by Michael Barton 11:19 AM
Commit [c3059e53f467da50d5017909fe87227a02445e13]
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Added method to estimate evolutionary... was committed by Michael Barton 11:19 AM
Commit [e40616ddb5055705468101625d5f01f205f6c239]
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Added loading of 002 analysis file ht... was committed by Michael Barton 11:19 AM
Commit [7715530af483b4bd09aa976e951750660bec851e]
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Added association testing for alignme... was committed by Michael Barton 11:19 AM
Commit [6f7d08f0750e98a5e41fc8382274c67f7de7cd29]
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Removed delete_all method http://gith... was committed by Michael Barton 11:19 AM
Commit [02f7281eb6fc9835c608179e530b4506a236707e]
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Storage model for sitewise rate was updated by Michael Barton
Monday Jun 16

#9 / Estimate sitewise evolution rates / open
ticket
Yeast Phylogenetic tree was created by Michael Barton 11:57 AM
#10 / Estimate sitewise evolution rates / new
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~~Storage model for sitewise rate~~ was updated by Michael Barton
Saturday Jun 14

#9 / Estimate sitewise evolution rates / ✓resolved
ticket
Added some simple testing for running... was committed by Michael Barton 03:23 PM
Commit [86cad34c7ce28b9621d8ee09f413232d03d5918f]
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Created DataMapper model for storing ... was committed by Michael Barton 03:23 PM
Commit [00e97c2e3fcfcd39b323cfff58b26365b2164ff2]
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Storage model for sitewise rate was updated by Michael Barton 03:23 PM
#9 / Estimate sitewise evolution rates / new
ticket
Added analysis task to run codeml on ... was committed by Michael Barton 03:23 PM
Commit [10dcaaa488489d5e46ce355a157dee7008acedcf]
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Added helper methods to generate temp... was committed by Michael Barton 03:23 PM
Commit [b30337dfcaff58bf4cccc0b4b46f80ed0d0c85f2]
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envionment.rb now loads vendor librar... was committed by Michael Barton
Friday Jun 13

Commit [bba897f5c254ad0daf93fa1a414ac11cc51f23b7]
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Main controller now provides a webser... was committed by Michael Barton 01:04 PM
Commit [19a159d7d7a1bc9e1f17b9729fc88bbd2ca88899]
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Updated main project description so t... was committed by Michael Barton 01:04 PM
Commit [cd29b63833837dc17151ab5e51cad7f3bd513f2f]
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Added to_s method for alignment. Adde... was committed by Michael Barton 12:59 PM
Commit [b63657127f0942de7bb016e10eca89ad9c1477b4]
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Alignment spec now creates a valid ge... was committed by Michael Barton 12:59 PM
Commit [6647ca30b0604522e5a4c28694679b34064a5038]
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Renamed spec data files to make more ... was committed by Michael Barton 12:59 PM
Commit [fc94924b8648192d6a260559a0a2f48e35b942dd]
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Michaelbarton Effects of cost in protein evolution

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