Run codeml on yeast alignments
Reported by Michael Barton | June 3rd, 2008 @ 01:09 PM | in Estimate sitewise evolution rates
Use codeml to estimate the sitewise evolutionary rates based on the yeast multiple sequence alignments.
Comments and changes to this ticket
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Michael Barton July 25th, 2008 @ 01:39 PM
- State changed from “new” to “open”
- Tag set to “analysis, codeml, parrallelisation, skynet, substituition-rates”
Update so that this will run in parallel on the cluster.
Running serially is not really an option.
Possiblity includes running using Skynet.
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Michael Barton July 25th, 2008 @ 02:23 PM
Need see if codeml is already on agent first.
I asked Simon Whelan about this via email, as I think he is already using it on agent.
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Michael Barton July 31st, 2008 @ 01:54 PM
Simon has confirmed codeml is on agent, and has given me the location
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Michael Barton July 31st, 2008 @ 01:54 PM
- State changed from “open” to “hold”
Wait until codeml is in bioruby
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Michael Barton August 13th, 2008 @ 03:13 PM
- State changed from “hold” to “resolved”
Completed using Evolutionary Rate and starfish helpers.
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Michael Barton