Update alignment model
Reported by Michael Barton | August 18th, 2008 @ 02:03 PM | in Load sequence data
- Three species alignments are ignored. Use a validation to do this.
- Check that the alignment sequence matches the loaded gene sequence. Use a validation.
Comments and changes to this ticket
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Michael Barton August 18th, 2008 @ 03:39 PM
Will not create validation for three species dataset. Instead will ignore this data set using a select statement.
Update tree method to throw an error if four alignments are not loaded.
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Michael Barton August 18th, 2008 @ 03:45 PM
- State changed from “new” to “open”
Add index to table for gene count
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Michael Barton August 18th, 2008 @ 08:18 PM
(from [1afdcdc090b5007eb30ebe4a4a509c4377d6534a]) Set validates_presence_of to be first validation run. [#13] http://github.com/michaelbarton/...
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Michael Barton August 18th, 2008 @ 08:18 PM
(from [7f264c9e69eb6b56b4a5894bedb7f97379923acc]) Reordered validations to execute in order. [#13] http://github.com/michaelbarton/...
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Michael Barton August 18th, 2008 @ 08:18 PM
(from [b46fb75a2d220595c9df0927cabe28aa2e106ea9]) Added validation to ensure that the yeast alignment sequence matches the gene sequence [#13] http://github.com/michaelbarton/...
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Michael Barton August 18th, 2008 @ 08:18 PM
(from [c8a2df6b43054c0496226e5cad2f58965eaeadf4]) Updated alignment to return only one tree [#13] http://github.com/michaelbarton/...
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Michael Barton August 18th, 2008 @ 08:21 PM
- Tag set to “alignments, analysis, gene-model, pylogenetic, validation”
- Added validation to ensure sequence of alignment matches gene sequence
- Added validation to ensure that there are four genes in the alignment.
- Updated tree method to return a single tree, as validations ensure there are always four sequences.
- Index for gene table not necessary.
New Todos
- Specing for incorrect gene-to-alignment sequence
- Specing for three genes not in alignment
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Michael Barton August 19th, 2008 @ 11:22 AM
Added spec to ensure that alignment is not valid if does not match gene sequence
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Michael Barton August 19th, 2008 @ 12:09 PM
(from [2c43279703ac5b254f5c83294b2412818177bf46]) Added specing to check that alignment is not valid if there are not four genes [#13] http://github.com/michaelbarton/...
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Michael Barton August 19th, 2008 @ 12:09 PM
(from [f0e9719ba081fa84cd3c1afc7c5d7b95062be868]) Updated specing to check that alignment is not valid if the gene does not match the alignment sequence. [#13] http://github.com/michaelbarton/...
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People watching this ticket
Michael Barton
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