Update loading of codeml data
Reported by Michael Barton | August 18th, 2008 @ 02:06 PM | in Estimate sitewise evolution rates
- Codeml should analyse all columns, including those with gaps.
- Columns should be correctly added to sequence alignment data
Comments and changes to this ticket
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Michael Barton August 19th, 2008 @ 12:14 PM
- State changed from “new” to “open”
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Michael Barton August 19th, 2008 @ 03:34 PM
(from [bb3ecb3ee772b504fd987c9a9be2513545d2d2e7]) Updated specing data for alignment YDL117C [#14] http://github.com/michaelbarton/...
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Michael Barton August 19th, 2008 @ 03:35 PM
(from [f90297f678aa00cac82adcd4b8600f893d5fc200]) Added Codeml option to include data with gaps [#14] http://github.com/michaelbarton/...
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Michael Barton August 19th, 2008 @ 03:35 PM
- Tag changed from “alignments, analysis, data, pylogenetic, substituition-rates” to “alignments, analysis, codeml, data, pylogenetic, substituition-rates”
Codeml now includes alignment indels in analysis
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Michael Barton August 19th, 2008 @ 06:30 PM
- State changed from “open” to “resolved”
Model for sitewise evolutionary rate updated match rates to alignment position.
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Michael Barton
Referenced by
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Update loading of codeml data
(from [bb3ecb3ee772b504fd987c9a9be2513545d2d2e7]) Updated...
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Update loading of codeml data
(from [f90297f678aa00cac82adcd4b8600f893d5fc200]) Added C...