Michaelbarton Effects of cost in protein evolution

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    • PhD Thesis
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    • 1 Calculate cost for alignment column
    • 1 Estimate sitewise evolution rates
    • 0 Load sequence data
    • 0 Website front end
  • Calculate cost for alignment column
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# State Title Milestone Assigned to Age ↓
6 ✓resolved Auto generated HTML representation of data Website front end Michael Barton over 17 years old
15 new Correlate tree length with non-synonymous mutations Estimate sitewise evolution rates Michael Barton almost 18 years old
16 new Estimate time spent in each amino acid Calculate cost for alignment column Michael Barton almost 18 years old
14 ✓resolved Update loading of codeml data Estimate sitewise evolution rates Michael Barton almost 18 years old
11 ✓resolved Add codeml code to Bioruby Estimate sitewise evolution rates Michael Barton almost 18 years old
13 ✓resolved Update alignment model Load sequence data Michael Barton almost 18 years old
7 ✓resolved Run codeml on yeast alignments Estimate sitewise evolution rates Michael Barton almost 18 years old
9 ✓resolved Update storage model for sitewise rate Estimate sitewise evolution rates Michael Barton almost 18 years old
3 ✓resolved Finish descriptions Load sequence data Michael Barton almost 18 years old
12 ✓resolved Alignment position model finished, data loaded Load sequence data Michael Barton almost 18 years old
10 ✓resolved Is yeast phylogenetic tree correct? Estimate sitewise evolution rates Michael Barton almost 18 years old
8 ✓resolved Validate sitewise estimations Estimate sitewise evolution rates Michael Barton almost 18 years old
2 ✓resolved Update READMEs Load sequence data Michael Barton about 18 years old
1 ✓hold Yeast gene regex Load sequence data Michael Barton about 18 years old
4 ✓resolved Validations for gene sequences Load sequence data Michael Barton about 18 years old
5 ✓resolved Milestones to stages Website front end Michael Barton about 18 years old
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alignments amino-acid-freequency analysis bioruby codeml data documentation evolution framework gene-model github links parrallelisation pylogenetic skynet substituition-rates text tree validation wall2005 website yeast
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