Changesets - Effects of cost in protein evolution

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Created R script to plot data distrib... was committed by Michael Barton

Monday Sep 15

Commit [531c99b68998ef7f9d7788aa2de35aba02e2d534]

Added produced data http://github.com... was committed by Michael Barton 02:18 PM

Commit [5586b2aee4f23610a5d500c8275ef4e5c346cdeb]

Added rake task to produce gene mutat... was committed by Michael Barton 02:17 PM

Commit [2907e99a654852243c5413502dce742343180e1d]

Added data summaries of each gene mut... was committed by Michael Barton 02:04 PM

Commit [271af867307f60e55209d83c0c566143b9bbe0ae]

Added updated rustat version http://g... was committed by Michael Barton 02:01 PM

Commit [0aceb24f64b69d1421ec2da8234d96ec64187b3a]

Added two rake tasks to generate summ... was committed by Michael Barton 01:59 PM

Commit [73f480f4655fca6d9c54452b8349dcfa77917169]

Added acts as summary to gene mutatio... was committed by Michael Barton 01:41 PM

Commit [d12d76e9c4f8fd89c55cd28fdbd0f05e7ae1fcb8]

Added updated rustat version http://g... was committed by Michael Barton 12:23 PM

Commit [8b1d2f8c52eddf7c9a701810391fd73a59907b80]

Added R script to plot gene alignment... was committed by Michael Barton

Saturday Sep 13

Commit [157752988bf43808ee38f53747f4dbc05ae49165]

Added r script to plot gene density h... was committed by Michael Barton 07:59 PM

Commit [e1979d4f1639ec97423e82e3f87da3dba70a8a8e]

Added generated data set http://githu... was committed by Michael Barton

Wednesday Sep 10

Commit [884e7c5a1e578d8cf5d11be35b6d8ae7e9ebc39e]

Created rake method to generate gene ... was committed by Michael Barton 03:14 PM

Commit [375a04c22a55d712ad9bc59c099625fdfbb77efb]

Switch AminoAcidFrequencies specing t... was committed by Michael Barton

Monday Sep 08

Commit [cd93ea88a296e97c6fe6f3baa9f170e3849d7bca]

Swtich RindRunner to use fixtures. Al... was committed by Michael Barton 01:45 PM

Commit [bf482c1ede89d1742114a0d0344488c9c7708103]

Created site mutation fixtures http:/... was committed by Michael Barton 01:43 PM

Commit [dde2c067e32d734958780d31c61e6daea8909718]

Added gene mutations fixture http://g... was committed by Michael Barton 01:20 PM

Commit [1131ddd3532d83d651adf3fdd68e2883650e956f]

Created fixtures for amino acids http... was committed by Michael Barton 01:14 PM

Commit [19232388e812528aa02edaab2372631d1bb37610]

Created generic method to clear all t... was committed by Michael Barton 01:13 PM

Commit [e2f8924baac82a8e92b8b3ba4f634d0b70f097fe]

Removed loader methods from spec help... was committed by Michael Barton 01:12 PM

Commit [832fe5bcb85bbde1611303fd5622dc10d7baaa0a]

Merge branch 'master' into fixtures h... was committed by Michael Barton 11:55 AM

Commit [6032419f9c5cc0786fc534f6bfc737963aa49a58]

Added before all statement to each sp... was committed by Michael Barton 11:54 AM

Commit [5e26568d50c3b851d4cba39f6b55cbe5caac31c7]

Replaced true/false values in alignme... was committed by Michael Barton 11:50 AM

Commit [22b18b9d141d59cdf26e9367cd00798410fb8754]

Created own fixtures method, to bypas... was committed by Michael Barton 11:49 AM

Commit [862531ac816b11229743ee2cb6a986f278d60a3a]

Removed load gene method http://githu... was committed by Michael Barton

Thursday Sep 04

Commit [abc0125a13a2b6bee8e41221ad120d8f688975b8]

Removed helper loading methods http:/... was committed by Michael Barton 08:41 PM

Commit [da396e750c16f56e6deb69d4edc8d7896f82779a]

Removed before/after statements from ... was committed by Michael Barton 07:49 PM

Commit [00f54a53b892e4071818a6c4828f29904353e1b5]

Removed before/after statements from ... was committed by Michael Barton 07:42 PM

Commit [839af6c1de742de35346867fc6f513ba172332de]

Removed before/after statements from ... was committed by Michael Barton 07:38 PM

Commit [9b9b31054fbe37d85f7137ce51cad7e051627ef7]

Added factory for alignment http://gi... was committed by Michael Barton 07:37 PM

Commit [c639f896c10b148259b6cd08183109dff4d5592f]

Added validation to site mutation to ... was committed by Michael Barton 06:39 PM

Commit [6eeef96c5342136007e86022fa8af2c81964595f]

Added alignment codon fixtures http:/... was committed by Michael Barton 06:39 PM

Commit [e15e34508b5c03d9d8f4832806226aabf3f5fa2d]

Added new specs for testing site muta... was committed by Michael Barton 06:38 PM

Commit [e61c87f0b698e857554a079de5f1f5421aa60d3e]

Added factory for site mutation http:... was committed by Michael Barton 06:37 PM

Commit [e6c9c7a49cdf0dfd2ef5a01273a3f3f235bafa8e]

Updated evolutionary rate specing to ... was committed by Michael Barton 06:10 PM

Commit [fc788bc9c659b9b0d7f7ceaaa4d89d8b18110658]

Added specing to test that wrong orde... was committed by Michael Barton 05:43 PM

Commit [04d98e1a089cb21718a828659200ea75fec6bba5]

Alignment Codons are created before a... was committed by Michael Barton 04:38 PM

Commit [4802b30b77755444b81498989cb3cf417933d49d]

Added specing to ensure that each ali... was committed by Michael Barton 04:33 PM

Commit [6d6118781b57247742abaee3a5bfddd925216e00]

Updated alignment codon spec to use f... was committed by Michael Barton 04:25 PM

Commit [3aee233c2cf51d690259dd02975528d94f2c0666]

Factories loaded in spec helper http:... was committed by Michael Barton 04:24 PM

Commit [41dc2b2fabf3ed210ba3d1c573244198f51da291]

Created factory for alignment codon h... was committed by Michael Barton 04:24 PM

Commit [5da7173a296af8a1d5fcfd19154a6bde75f29f9b]

Updated alignment codon specing to us... was committed by Michael Barton 03:35 PM

Commit [672e6f9e51e539f26a0f63e90f34e995eb0067c8]

Corrected indentation http://github.c... was committed by Michael Barton 03:33 PM

Commit [5fb537a3e7be49591c8eff3d3e2a4fe56afb8fc6]

Created rake task to execute starfish... was committed by Michael Barton 01:53 PM

Commit [a42c50355f3dc855fd261ced8acb653ef3177f87]

Added starfish class to execute RindR... was committed by Michael Barton 01:52 PM

Commit [4fc0d25f274b131dd2067efe668a71fee49aa718]

Added helper method to rind runner to... was committed by Michael Barton 01:51 PM

Commit [fec318251cf33aab5b7677e82f11a7648bcf103c]

Added method to populate amino acid f... was committed by Michael Barton 01:22 PM

Commit [24733395c808975199d6931df309b7fce6dc692f]

Added specing for amino acid frequenc... was committed by Michael Barton 01:21 PM

Commit [41f30c7c80aa82489371a2d0632b4b40d9f2032b]

Added indicies to amino acid frequenc... was committed by Michael Barton 01:21 PM

Commit [a9dffd406c4773be36329d2da8f8dcfea15846fc]

Fixed amino acid class http://github.... was committed by Michael Barton 12:17 PM

Commit [c8db0c2b17364d6ee36dc7b22f09cc0a6db0484d]

Removed erroneous print statements ht... was committed by Michael Barton

Wednesday Sep 03

Commit [41e827e4f686f89871d89980b8f5805e8ae61501]

Created rind runner helper http://git... was committed by Michael Barton 05:33 PM

Commit [138e3e6daa46ac9ffddc2e3aa7b347462ced5848]

Added specing for running rind inside... was committed by Michael Barton 05:32 PM

Commit [65566be0abf109f33a05f16c919089dd2d58b01e]

Fixed spacing in migration http://git... was committed by Michael Barton 05:31 PM

Commit [07bf83feab1a35cc104b948caae4900161655a73]

Merge branch 'master' into rind http:... was committed by Michael Barton 12:32 PM

Commit [a8caa720c9c7240c29407543589daee6a3628f3d]

Added fixture files for gene and alig... was committed by Michael Barton 12:30 PM

Commit [3db85083feb92f15d4c77af2c910dcadff31d106]

Added a load fixtures method spec hel... was committed by Michael Barton 12:27 PM

Commit [ffa36e046f35dea5afa3da432618570d0b1c98b1]

Merge branch 'master' into fixtures h... was committed by Michael Barton 12:26 PM

Commit [606cd9839d93b027f38108147718b6cf39d1f034]

Added active record fixtures to load ... was committed by Michael Barton 12:25 PM

Commit [876d8c4f977c6a555cee22f387da3b30bc69ab87]

Added helper method to evolutionary r... was committed by Michael Barton 12:25 PM

Commit [a2fe5b5a9d778ea312fe30ee0b801915f8635a46]

Updated gene specing, load_gene is no... was committed by Michael Barton

Tuesday Sep 02

Commit [f819c153d02548855d6505748e2b2ab9859f1c81]

Michaelbarton Effects of cost in protein evolution

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